PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g04270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 180aa    MW: 20566.9 Da    PI: 10.7721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g04270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-1952101255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + g
  Vang09g04270.1  52 KFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMSG 101
                     89******9.**********8.....334*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3351110IPR001471AP2/ERF domain
PfamPF008472.6E-125299IPR001471AP2/ERF domain
SMARTSM003806.0E-4052115IPR001471AP2/ERF domain
PROSITE profilePS5103221.94452109IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2052110IPR016177DNA-binding domain
CDDcd000187.76E-3452109No hitNo description
PRINTSPR003671.0E-105364IPR001471AP2/ERF domain
PRINTSPR003671.0E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
FKFSKRKRFS LNSPASSYFS LPLYLLITLN PKSLTSIFSI IIIIVVMVQT RKFRGVRQRH  60
WGSWVSEIRH PLLKRRVWLG TFETAEEAAR AYDQAAILMS GRNAKTNFPM LQTPEGDPKT  120
LTATHETPST SKELEEILHA KLRKCGKLPS PSMTCLRLDP ENSHIGVWQK RAGHCSDSNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1648110164ATERF1
3gcc_A2e-1648110164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-180AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495570.19e-98PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI332e-60WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0S3RGH71e-132A0A0S3RGH7_PHAAN; Uncharacterized protein
STRINGGLYMA06G29110.22e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-51ERF family protein